PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400050864
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 294aa    MW: 33464.1 Da    PI: 5.8384
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400050864genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.51.3e-23112173159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                           +dDg++WrKYGqK++ +s++pr+Y+rCt++   +C++ k+v++ +++p+ + +tY g+H+++
  PGSC0003DMP400050864 112 VDDGHAWRKYGQKQILNSTYPRHYFRCTHKydqKCQASKQVQKIQDNPQRFRTTYYGHHTCK 173
                           59***************************99999**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-2498173IPR003657WRKY domain
PROSITE profilePS5081120.002107175IPR003657WRKY domain
SuperFamilySSF1182909.81E-24109173IPR003657WRKY domain
SMARTSM007741.1E-33112174IPR003657WRKY domain
PfamPF031063.0E-22113173IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDNSSTDLNR AIEGLIRGRE FTRRLKEIIK KPLVVGGEVA NIMAEELVAK IMESFSETLS  60
VINNSDVIIT TPVEVKSPED YSSGSCKSSD RRGCYKRRKT SESNIKESSD LVDDGHAWRK  120
YGQKQILNST YPRHYFRCTH KYDQKCQASK QVQKIQDNPQ RFRTTYYGHH TCKAFPRVSQ  180
IILDSPMDGN SNYISFDQNH TFPSIKQETK EEVVFGFYPK IEDQIQSSSS DYFLPNDHDH  240
DHLTPATFEA SGSRMTSPDV MSSGVYSSCT TTSNDNLEID IDFEEGLWNF DQV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0569180.0EU056918.1 Solanum tuberosum WRKY transcription factor 6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001275414.10.0WRKY transcription factor 6
TrEMBLM1CUN10.0M1CUN1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000750910.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42302143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.19e-38WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]